spatialvi.model.SCVIVA
======================

.. currentmodule:: spatialvi.model

.. autoclass:: SCVIVA

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~SCVIVA.__init__
      ~SCVIVA.compute_neighbors
      ~SCVIVA.convert_legacy_save
      ~SCVIVA.data_registry
      ~SCVIVA.deregister_manager
      ~SCVIVA.differential_abundance
      ~SCVIVA.differential_expression
      ~SCVIVA.from_spatialdata
      ~SCVIVA.get_aggregated_posterior
      ~SCVIVA.get_anndata_manager
      ~SCVIVA.get_batch_representation
      ~SCVIVA.get_composition_error
      ~SCVIVA.get_elbo
      ~SCVIVA.get_feature_correlation_matrix
      ~SCVIVA.get_from_registry
      ~SCVIVA.get_importance_weights
      ~SCVIVA.get_latent_library_size
      ~SCVIVA.get_latent_representation
      ~SCVIVA.get_likelihood_parameters
      ~SCVIVA.get_marginal_ll
      ~SCVIVA.get_niche_error
      ~SCVIVA.get_normalized_expression
      ~SCVIVA.get_reconstruction_error
      ~SCVIVA.get_setup_arg
      ~SCVIVA.get_state_registry
      ~SCVIVA.get_var_names
      ~SCVIVA.load
      ~SCVIVA.load_query_data
      ~SCVIVA.load_registry
      ~SCVIVA.minify_adata
      ~SCVIVA.plot_spatial_embedding
      ~SCVIVA.posterior_predictive_sample
      ~SCVIVA.predict_neighborhood
      ~SCVIVA.predict_niche_activation
      ~SCVIVA.prepare_query_anndata
      ~SCVIVA.prepare_query_mudata
      ~SCVIVA.preprocessing_anndata
      ~SCVIVA.preprocessing_query_anndata
      ~SCVIVA.register_manager
      ~SCVIVA.save
      ~SCVIVA.setup_anndata
      ~SCVIVA.setup_spatialdata
      ~SCVIVA.to_device
      ~SCVIVA.train
      ~SCVIVA.transfer_fields
      ~SCVIVA.update_setup_method_args
      ~SCVIVA.view_anndata_setup
      ~SCVIVA.view_registry
      ~SCVIVA.view_setup_args
      ~SCVIVA.view_setup_method_args
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~SCVIVA.adata
      ~SCVIVA.adata_manager
      ~SCVIVA.device
      ~SCVIVA.get_normalized_function_name
      ~SCVIVA.history
      ~SCVIVA.is_trained
      ~SCVIVA.minified_data_type
      ~SCVIVA.registry
      ~SCVIVA.run_id
      ~SCVIVA.run_name
      ~SCVIVA.summary_string
      ~SCVIVA.test_indices
      ~SCVIVA.train_indices
      ~SCVIVA.validation_indices