Developer API

Internal base classes and mixins used to build new spatialvi models.

Base classes

SpatialBaseModel	Base class for all spatialvi models.
SpatialNeighborhoodMixin	Mixin for spatial neighbor graph computation.
SpatialDeconvolutionMixin	Mixin for spatial deconvolution result formatting and visualization.
ResolVIPredictiveMixin	Mixin class for generating samples from posterior distribution using infer.predictive.

Data fields

SpatialCoordsField	AnnData obsm field for 2D/3D spatial coordinates.
NeighborhoodGraphField	AnnData obsm field for neighbor index/distance arrays.

Modules (neural networks)

nicheVAE	Variational auto-encoder with niche decoders [].
JVAE	Joint variational auto-encoder for imputing missing genes in spatial data.