spatialvi.settings

spatialvi.settings = <spatialvi._settings.SpatialviConfig object>

Config manager for spatialvi.

Examples

To set the seed

>>> spatialvi.settings.seed = 1

To set the batch size for functions like SCVIVA.get_latent_representation

>>> spatialvi.settings.batch_size = 1024

To set the progress bar style, choose one of “rich”, “tqdm”

>>> spatialvi.settings.progress_bar_style = "rich"

To set the verbosity

>>> import logging
>>> spatialvi.settings.verbosity = logging.INFO

To set the number of threads, PyTorch will use

>>> spatialvi.settings.num_threads = 2