User API

User API#

Import spatialvi-tools as:

import spatialvi

Models#

model.SCVIVA

scVIVA: variational auto-encoder with niche decoders for ST:cite:p:Levy25.

model.DestVI

Multi-resolution deconvolution of Spatial Transcriptomics data (DestVI) [].

model.ResolVI

ResolVI addresses noise and bias in single-cell resolved spatial transcriptomics data.

model.GIMVI

Joint VAE for imputing missing genes in spatial data [].

External models#

external.RNAStereoscope

Reimplementation of Stereoscope for the scRNA-seq component [].

external.SpatialStereoscope

Reimplementation of Stereoscope for the spatial component [].

Settings#

settings

Config manager for spatialvi.