spatialvi.model.base.SpatialDeconvolutionMixin#
- class spatialvi.model.base.SpatialDeconvolutionMixin[source]#
Mixin for spatial deconvolution result formatting and visualization.
Applied to: DestVI only.
Requires the model to implement: -
self.cell_type_mapping: np.ndarray of cell type label strings -self.get_proportions(adata): returns np.ndarray of shape (n_spots, n_cell_types)- __init__()#
Methods
__init__()get_proportions_df([adata])Return cell type proportions as a tidy DataFrame.
plot_cell_type_map([adata, cell_type, basis, ax])Plot spatial map of a single cell type's proportion.